PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00051.1_g00025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 185aa    MW: 20536.2 Da    PI: 8.862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00051.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-19555155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             ++++GVr++  +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  ++g
  Rsa1.0_00051.1_g00025.1  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFNTAEEAARAYDQAAVLMNG 55
                             59*****999.**********8.....334*********************977765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.68E-33564No hitNo description
SuperFamilySSF541711.96E-20664IPR016177DNA-binding domain
SMARTSM003805.0E-39669IPR001471AP2/ERF domain
PfamPF008477.3E-12651IPR001471AP2/ERF domain
PROSITE profilePS5103221.746663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32663IPR001471AP2/ERF domain
PRINTSPR003671.4E-10718IPR001471AP2/ERF domain
PRINTSPR003671.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MVSSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFNTAE EAARAYDQAA VLMNGQNAKT  60
NFPVIKSNGS VSPDVNSPLS ELLNAKLRKN CKDQTPYLTC LRLDNDSSHI GVWQKRAGSS  120
SSQNWVKLVE LGDSVNASAG DAGSDKMKKG NDDVEEEDQM AMQMIEELLN WTCPASASIS  180
GKIFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16469369ATERF1
3gcc_A1e-16469369ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893210.0AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660867.11e-127PREDICTED: ethylene-responsive transcription factor SHINE 3
SwissprotQ3E9581e-108SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A078DFD91e-127A0A078DFD9_BRANA; BnaC09g04040D protein
STRINGBra036543.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.21e-100ERF family protein